People
Ralph Peterson
Postdoctoral Fellow, Basis Research Institute
Ralph Peterson is a postdoctoral fellow at Basis, where he develops multimodal sensing systems and computational tools to study animal behavior. His current fieldwork studies vocal communication and collective behavior in urban rat populations across New York City and Boston. Ralph earned his PhD in Neural Science from NYU, where he investigated vocal communication and auditory processing in social rodents using computational neuroethology. Prior to his PhD, he developed quantitative methods for analyzing animal behavior at Harvard Medical School.
About
I am a postdoctoral research scientist at Basis, where I develop multimodal sensing systems and computational tools for studying animal behavior in natural environments. My current research focuses on the computational urban ecology of NYC rats. I am interested in understanding rat cognition in the natural world: how wild rats communicate, how they coordinate collective behavior, and how they navigate the rich urban environments they share with us. To study these questions, I combine thermal imaging, ultrasonic acoustic recordings, and machine learning to monitor wild populations across NYC and Boston, working alongside municipal partners and pest management organizations.
My broader applied vision is to take basic research and turn it into safe and robust systems that actually work outside the lab. My current research on wild rats is one example. It combines hardware, software, and analysis built alongside municipal and pest management partners who need the system to work reliably in the field. I take inspiration from the Bell Labs model of the technically deep generalist who moves between theory, experiment, engineering, and deployment, and treats the path from scientific idea to working system as a single problem.
Before joining Basis, I completed my PhD in Neural Science at NYU under the supervision of Dan Sanes, David Schneider, and Alex Williams. My PhD research investigated the computational neuroethology of vocal communication in social rodents. I discovered that Mongolian gerbil families have unique vocal dialects that remain stable over weeks (eLife 2024) and built a state-of-the-art deep learning system and first benchmark for localizing rodent vocalizations from multi-channel audio (VCL, NeurIPS 2024). Finally, I identified a novel form of antiphonal ultrasonic communication in gerbils, using wireless electrophysiology and pharmacological inactivation to demonstrate that auditory cortex plays a causal role in this behavior. My dissertation received NYU’s Outstanding Dissertation Award in Science & Technology.
Prior to my PhD, I worked with Alex Wiltschko in the Datta lab at Harvard Medical School, developing computational methods for analyzing mouse behavior and making foundational contributions to MoSeq. I received my B.S. in Behavioral Neuroscience from Northeastern University, where I worked in the lab of Rebecca Shansky.
Projects
Current and recent Basis projects.
In the News
Talks, announcements, and recent highlights.
New York City’s Rats Have a Secret Nightlife—And a Language Humans Can’t Hear
The Chatterbox Rats of Manhattan
Is the Rat War Over?
Could NYC’s harsh winter weather lower the rat population? Why experts say don’t count on it
Selected Publications
Earlier selected work.
Inferring cognitive strategies from groups of animals in natural environments
Ines Aitsahalia, Thomas L. Botch, Shijie Gu, Thomas O’Connell, Rebecca Siegel, R. Peterson, D. Batenkov, E. Mackevicius
Computational Urban Ecology of New York City Rats
R. Peterson, D. Batenkov, Ahmed El Hady, E. Mackevicius
Family identity is represented within vocal categories by the gerbil auditory cortex
Estelle E. In’t Zandt, R. Peterson, Dan H. Sanes
Vocal Call Locator Benchmark (VCL) for localizing rodent vocalizations from multi-channel audio
R. Peterson, Aramis Tanelus, Christopher Ick, Bartul Mimica, Niegil Francis, Violet J Ivan, Aman Choudhri, Annegret L Falkner, Mala Murthy, David M. Schneider, Dan H. Sanes, Alex H. Williams
Unsupervised discovery of family specific vocal usage in the Mongolian gerbil
R. Peterson, Aman Choudhri, Catalin Mitelut, Aramis Tanelus, Athena Capo-Battaglia, Alex H. Williams, David M. Schneider, Dan H. Sanes
Mapping Sub-Second Structure in Mouse Behavior
Alexander B. Wiltschko, Matthew J. Johnson, Giuliano Iurilli, R. Peterson, Jesse M. Katon, Stan L. Pashkovski, Victoria E. Abraira, Ryan P. Adams, Sandeep Robert Datta